Publications

Original Papers Books and Reviews
2024 2023 2022 2021 2020 2019

Original Papers 2020

  • Fujihira H, Masahara-Negishi Y, Akimoto Y, Hirayama H, Lee H-C, Story BA, Mueller WF, Jakob P, Clauder-Münster S, Steinmetz LM, Radhakrishnan SK, Kawakami H, Kamada Y, Miyoshi E, Yokomizo T, Suzuki T: Liver-specific deletion of Ngly1 causes abnormal nuclear morphology and lipid metabolism under food stress. Biochim. Biophys. Acta – Mol. Basis Dis. 1866, 165588 (2020)
  • Miyoshi E, Kamada Y, Suzuki T: Functional glycomics: application to medical science and hepatology. Hepatol Res 50, 153-164 (2020)
  • Huang C, Suzuki T: The occurrence of nonglycosylated forms of N-glycoprotein upon proteasome inhibition does not confirm cytosolic deglycosylation. FEBS Lett 594, 1433-1442 (2020)
  • Asahina M, Fujinawa R, Nakamura S, Yokoyama K, Tozawa R, Suzuki T: Ngly1−/− rats develop neurodegenerative phenotypes and pathological abnormalities in their peripheral and central nervous systems. Hum. Mol. Genet. 29, 1635-1647 (2020)
  • Hosomi A, Iida K, Cho T, Iida H, Kaneko M, Suzuki T: The ER-associated protease Ste24 prevents N-terminal signal peptide-independent protein translocation into the ER in Saccharomyces cerevisiae. J. Biol. Chem. 295, 10406-10419 (2020)
  • Maynard JC, Fujihira H, Dolgonos GE, Suzuki T: Burlingame AL. Formation of N-GlcNAc proteins is upregulated upon inhibition of proteasome activity in Ngly1-KO cells. Biochem. Biophys. Res. Commun. 530, 719-724 (2020)
  • Galeone A, Adams JM, Matsuda S, Presa MF, Pandey A, Han SY, Tachida Y, Hirayama H, Vaccari T, Suzuki T, Lutz C, Affolter M, Zuberi A, Jafar-Nejad H: Regulation of BMP4/Dpp retrotranslocation and signaling by deglycosylation. eLife 9, e55596 (2020)
  • Harada Y, Nakajima K, Suzuki T, Fukushige T, Kondo K, Seino J, Ohkawa Y, Suzuki T, Inoue H, Kanekura T, Dohmae N, Taniguchi N, Maruyama I: Glycometabolic regulation of the biogenesis of small extracellular vesicles. Cell Rep. 33, 108261 (2020)
  • Abe J, Guy AT, Ding F, Greimel P, Hirabayashi Y, Kamiguchi H, Ito Y: Systematic synthesis of novel phosphoglycolipid analogues as potential agonists of GPR55. Organic & Biomolecular Chemistry <doi: 10.1039/d0ob01756f>
  • Guy AT, Ding F, Abe J, Inoue M, Hirabayashi Y, Ito Y, Kamiguchi H, Greimel P: Lysolipid chain length switches agonistic to antagonistic G protein-coupled receptor modulation. ACS Chemical Neuroscience <doi: 10.1021/acschemneuro.0c00521>
  • Guy AT, Kamiguchi H: Lipids as new players in axon guidance and circuit development. Current Opinion in Neurobiology 66: 22-29, (2020)
  • Takahashi M, Sugiyama A, Wei R, Kobayashi S, Fukuda K, Nishino H, Takahashi R, Tsutsumi K, Kita I, Ando K, Manabe T, Kamiguchi H, Tomomura M, Hisanaga SI: Hyperactive and impulsive behaviors of LMTK1 knockout mice. Scientific Reports 10, 15461, (2020)
  • Chan C, Ooashi N, Akiyama H, Fukuda T, Inoue M, Matsu-Ura T, Shimogori T, Mikoshiba K, Kamiguchi H: Inositol 1,4,5-trisphosphate receptor type 3 regulates neuronal growth cone sensitivity to guidance signals. iScience 23, 100963, (2020)
  • Akiyama H, Ide M, Nagatsuka Y, Sayano T, Nakanishi E, Uemura N, Yuyama K, Yamaguchi Y, Kamiguchi H, Takahashi R, Aerts JMFG, Greimel P, Hirabayashi Y: Glucocerebrosidases catalyze a transgalactosylation reaction that yields a newly identified brain sterol metabolite, galactosylated cholesterol. Journal of Biological Chemistry 295, 5257-5277, (2020)
  • Akiyama H, Iwasaki Y, Yamada S, Kamiguchi H, Sakakibara S: Control of cell migration by the novel protein phosphatase-2A interacting protein inka2. Cell and Tissue Research 380, 527-537, (2020)
  • Nagata M, Toyonaga K, Ishikawa E, Haji S, Okahashi N, Takahashi M, Izumi Y, Imamura A, Takato K, Ishida H, Nagai S, Illarinov P, Stocker BL, Timmer M, Smith D, Williams SJ, Bamba T, Miyamoto T, Arita M, Appelmelk BJ, Yamasaki S: Helicobacter pylori metabolites exacerbate gastritis through C-type lectin receptors. J Exp Med 218, e (2020)0815 (2020)
  • Sakayori N, Katakura M, Hamazaki K, Higuchi O, Fujii K, Fukabori R, Iguchi Y, Setogawa S, Takao K, Miyazawa T, Arita M, Kobayashi K: Maternal dietary imbalance between omega-6 and omega-3 fatty acids triggers the offspring’s overeating in mice. Commun Biol 3, 473 (2020)
  • Ogawa M, Ishihara T, Isobe Y, Kato T, Kuba K, Imai Y, Uchino Y, Tsubota K, Arita M: Eosinophils promote corneal wound healing via the 12/15-lipoxygenase pathway. FASEB J 34, 12492-12501 (2020)
  • Ogawa K, Asano K, Yotsumoto S, Yamane T, Arita M, Hayashi Y, Harada H, Makino-Okamura C, Fukuyama H, Kondo K, Yamasoba T, Tanaka M: Frontline Science: Conversion of neutrophils into atypical Ly6G+SiglecF+ immune cells with neurosupportive potential in olfactory neuroepithelium. J Leukoc Biol in press
  • Sanjo H, Yao T, Katagiri K, Sato T, Matsumura T, Komeya M, Yamanaka H, Yao M, Matsuhisa A, Asayama Y, Ikeda K, Kano K, Aoki J, Arita M, Ogawa T: Antioxidant vitamins and lysophospholipids are critical in inducing mouse spermatogenesis under organ culture condition. FASEB J 34, 9480-9497 (2020)
  • Tsugawa H, Ikeda K, Takahashi M, Satoh A, Mori Y, Uchino H, Okahashi N, Yamada Y, Tada I, Bonini P, Higashi Y, Okazaki Y, Zhou Z, Zhu Z, Koelmel J, Cajka T, Fiehn O, Saito K, Arita M, Arita M. A lipidome atlas in MS-DIAL 4. Nat Biotechnol 38, 1159-1163 (2020)
  • Hirata SI, Nagatake T, Sawane K, Hosomi K, Honda T, Ono S, Ikeda K, Aoyagi R, Adachi J, Abe Y, Isoyama J, Suzuki H, Tomonaga T, Kiyono H, Kabashima K, Arita M, Kunisawa J: Maternal ω3 docosapentaenoic acid inhibits infant allergic dermatitis through TRAIL-expressing plasmacytoid dendritic cells in mice. Allergy 75, 1935-1951 (2020)
  • Morita M, Saito S, Shinohara R, Aoyagi R, Arita M, Kobayashi Y. Synthesis of phosphatidylcholines possessing functionalized acids at sn-2, and 13C-14N and 13C-31P couplings in their 13C NMR spectra. Synlett 31, 718-722 (2020)
  • Sasaki H, Kaneda Y, Rogi T, Shibata H, Aoyagi R, Yamane T, Ikeda K, Arita M: Aging alters lipid mediator biosynthesis from polyunsaturated fatty acids in the brain of senescence-accelerated mice with age-related cognitive dysfunction. Medical Mass Spectrometry 4, 65-75 (2020)
  • Kimura I, Miyamoto J, Ohue-Kitano R, Watanabe K, Yamada T, Onuki M, Aoki R, Isobe Y, Kashihara D, Inoue D, Inaba A, Takamura Y, Taira S, Kumaki S, Watanabe M, Ito M, Nakagawa F, Irie J, Kakuta H, Shinohara M, Iwatsuki K, Tsujimoto G, Ohno H, Arita M, Itoh H, Hase K: Maternal gut microbiota in pregnancy influences offspring metabolic phenotype. Science 367, eaaw8429 (2020)
  • Utsunomiya A, Chino T, Utsunomiya N, Luong VH, Tokuriki A, Naganuma T, Arita M, Higashi K, Saito K, Suzuki N, Ohara A, Sugai M, Sugawara K, Tsuruta D, Oyama N, Hasegawa M: Homeostatic function of dermokine in the skin barrier and inflammation. J Invest Dermatol 140, 838-849 (2020)
  • Ikeda Y, Jurica P, Kimura H, Takagi H, Struzik ZR, Kiyono K, Arata Y, Sako Y: C. elegans episodic swimming is driven by multifractal kinetics. Sci Rep. 10(1):14775. (2020).
  • Arata Y, Oshima T, Ikeda Y, Kimura H, Sako Y: OP50, a bacterial strain conventionally used as food for laboratory maintenance of C. elegans, is a biofilm formation defective mutant. MicroPubl Biol.;(2020):10.17912/micropub.biology.000216. (2020).
  • Okamoto K, Hibino K, Sako Y: In-cell single-molecule FRET measurements reveal three conformational state changes in RAF protein. Biochim Biophys Acta Gen Subj. 1864(2):129358. (2020)
  • Hanashima S, Fukuda N, Malabeda R., Murata M, Kinoshita M, Greimel P, Hirabayashi Y: β-Glucosylation of Cholesterol Reduces Sterol-Sphingomyelin Interactions. BBA – Biomembranes, (2020), accepted.
  • Ishibashi Y, Ito M, Hirabayashi Y: The sirtuin inhibitor cambinol reduces intracellular glucosylceramide with ceramide accumulation by inhibiting glucosylceramide synthase. Biosci Biotechnol Biochem. 24:1-9(2020)
  • Esaki K, Balan S, Iwayama Y, Shimamoto-Mitsuyama C, Hirabayashi Y, Dean B, Yoshikawa T: Evidence for Altered Metabolism of Sphingosine-1-Phosphate in the Corpus Callosum of Patients with Schizophrenia. Schizophr Bull. 29;46(5),1172-81(2020)
  • Hirabayashi Y, Kim YJ: Roles of GPRC5 family proteins: focusing on GPRC5B and lipid-mediated signalling. J Biochem. 167(6),541-547(2020)
  • Ohbuchi K, Sakurai N, Kitagawa H, Sato M, Suzuki H, Kushida H, Nishi A, Yamamoto M, Hanazaki K, Arita M: Differential annotation of converted metabolites (DAC-Met): Exploration of Maoto (Ma-huang-tang)-derived metabolites in plasma using high-resolution mass spectrometry. Metabolomics, 16(5), 63, (2020)
  • Tada I, Chaleckis R, Tsugawa H, Meister I, Zhang P, Lazarinis N, Dahlén B, Wheelock CE, Arita M: Correlation-based Deconvolution (CorrDec) to generate high-quality MS2 spectra from data-independent acquisition in multi-sample studies. Analytical Chemistry, 92(16), 11310-11317, (2020)
  • Nothias LF, Petras D, Schmid R, Dührkop K, Rainer J, Sarvepalli A, Protsyuk I, Ernst M, Tsugawa H, Fleischauer M, Aicheler F, Aksenov AA, Alka O, Allard PM, Barsch A, Cachet X, Caraballo-Rodriguez AM, Da Silva RR, Dang T, Garg N, Gauglitz JM, Gurevich A, Isaac G, Jarmusch AK, Kameník Z, Kang KB, Kessler N, Koester I, Korf A, Le Gouellec A, Ludwig M, Martin H C, McCall LI, McSayles J, Meyer SW, Mohimani H, Morsy M, Moyne O, Neumann S, Neuweger H, Nguyen NH, Nothias-Esposito M, Paolini J, Phelan VV, Pluskal T, Quinn RA, Rogers S, Shrestha B, Tripathi A, van der Hooft JJJ, Vargas F, Weldon KC, Witting M, Yang H, Zhang Z, Zubeil F, Kohlbacher O, Böcker S, Alexandrov T, Bandeira N, Wang M, Dorrestein PC: Feature-based molecular networking in the GNPS analysis environment. Nature Methods,17(9):905-908, (2020)
  • Fraisier-Vannier O, Chervin J, Cabanac G, Puech V, Fournier S, Durand V, Amiel A, André O, Benamar OA, Dumas B, Tsugawa H, Marti G: MS-CleanR: A Feature-Filtering Workflow for Untargeted LC-MS Based Metabolomics. Analytical Chemistry, 92(14), 9971-9981, (2020)
  • Katakami N, Omori K, Taya N, Arakawa S, Takahara M, Matsuoka TA, Tsugawa H, Furuno M, Bamba T, Fukusaki E, Shimomura I: Plasma metabolites associated with arterial stiffness in patients with type 2 diabetes. Cardiovasc Diabetology, 19(1):75, (2020)
  • Bonini P, Kind T, Tsugawa H, Barupal DK, Fiehn O: Retip: Retention Time Prediction for Compound Annotation in Untargeted Metabolomics. Analytical Chemistry, 92(11):7515-7522, (2020)
  • Koelmel JP, Li X, Stow SM, Sartain MJ, Murali A, Kemperman R, Tsugawa H, Takahashi M, Vasiliou V, Bowden JA, Yost RA, Garrett TJ, Kitagawa N: Lipid Annotator: Towards Accurate Annotation in Non-Targeted Liquid Chromatography High-Resolution Tandem Mass Spectrometry (LC-HRMS/MS) Lipidomics Using A Rapid and User-Friendly Software. Metabolites, 10(3):101, (2020)
  • Omori K, Katakami N, Arakawa S, Yamamoto Y, Ninomiya H, Takahara M, Matsuoka TA, Tsugawa H, Furuno M, Bamba T, Fukusaki E, Shimomura I: Identification of Plasma Inositol and Indoxyl Sulfate as Novel Biomarker Candidates for Atherosclerosis in Patients with Type 2 Diabetes. -Findings from Metabolome Analysis Using GC/MS. J Atheroscler Thromb. 27(10), 1053-1067 (2020)
  • Lodochnikova OA, Chulakova DR, Gerasimova DP, Litvinov IA, Pradipta AR, Tanaka K, Kurbangalieva AR: Stereochemical features of the crystallization of eight-membered 1,5-diazaheterocycles with chiral aminoindanol fragments at nitrogen atoms. J. Struct. Chem., 61, doi: 10.26902/JSC_id49649 (2020)
  • Tanaka K, Vong K: Unlocking the therapeutic potential of artificial metalloenzymes. Proc. Jpn. Acad. Ser. B., in press (2020).
  • Vong K, Yamamoto T, Tanaka K: Artificial glycoproteins as a scaffold for targeted drug therapy. Small, 1906890 (2020)
  • Nomura S, Egawa Y, Urano S, Tahara T, Watanabe Y, Tanaka K: Cancer discrimination by on-cell N-glycan ligation. Commun. Chem., 3, 26 (2020)
  • Pradipta AR, Tanei T, Morimoto K, Shimazu K, Noguchi S, Tanaka K: Emerging technologies for real-time intraoperative margin assessment in future breast-conserving surgery. Adv. Sci., 1901519 (2020)
  • Vong K, Tanaka K: In vivo metal catalysis in living biological systems, in Handbook of in vivo chemistry in mice, From Lab to living system, Tanaka K. and Vong K. (eds), Wiley-VCH, 309-353 (2020)
  • Vong K, Tanaka K, Fukase K: Glycan-mediated targeting method. in Handbook of in vivo chemistry in mice, From Lab to living system, Tanaka K. and Vong K. (eds), Wiley-VCH, 489-529 (2020)
  • Fujiki K, Kanayama Y, Yano S, Sato N, Yokokita T, Ahmadi P, Watanabe Y, Haba H, Tanaka K: Practical synthesis of 211At-labeled immunoconjugate by double click method for α-emission cancer radiotherapeutics. RIKEN Accel. Prog. Rep., 52, 22 (2020)
  • Fujiki K, Tanaka K: Exploration of the fluoride reactivity of aryltrifluoroborate on selective cleavage of diphenylmethylsilyl group. Eur. J. Org. Chem., 4616-4620 (2020)
  • Chang TC, Pradipta AR, Tanaka K: Enantioselective synthesis of cyclic and linear diamines by iminocycloaddition. Chirality, 32, 1160-1168 (2020)
  • Tanaka K, Vong K: The journey to in vivo synthetic chemistry: From azaelectrocyclization to artificial metalloenzymes. Bull. Chem. Soc. Jpn., 93, 1275-1286 (2020)
  • Pradipta AR, Tanaka K: Methods for acrolein detection: Recent advances and applications, J. Idn. Chem. Soc., 3, 73-80 (2020)
  • Vong K, Yamamoto T, Chang TC, Tanaka K: Bioorthogonal release of anticancer drugs via gold-triggered 2-alkynylbenzamide cyclization, Chem. Sci., 11, 10928-10933 (2020)
  • Farabi K, Manabe Y, Ichikawa H, Miyake S, Tsutsui M, Kabayama K, Yamaji T, Tanaka K, Hung SC, Fukase K: Concise and reliable synthesis of glycodendrimers via self-activating click chemistry: Robust strategy for mimicking multivalent glycan-pathogen interactions. J. Org. Chem., DOI: 10.1021/acs.joc0c01547 (2020)
  • Smirnov I, Sibgatullina R, Urano S, Tahara T, Ahmadi P, Watanabe Y, Pradipta AR, Kurbangalieva A, Tanaka K: A strategy for tumor targeting by high-order glycan pattern recognition: Synthesis and in vitro and in vivo properties of glycoalbumins conjugated with four different N-glycan molecules. Small, DOI: 10.1002/smll.202004831, 2004831 (2020)
  • Muguruma K, Pradipta AR, Ode Y, Terashima K, Michiba H, Fujii M, Tanaka K: Disease-associated acrolein: A possible diagnostic and therapeutic substrate for in vivo synthetic chemistry, Bioorg. Med. Chem., accepted (2020)
  • Kasahara T, Kubota-Sakashita M, Nagatsuka Y, Hirabayashi Y, Hanasaka T, Tohyama K, Kato T: Cardiolipin is essential for early embryonic viability and mitochondrial integrity of neurons in mammals. FASEB J. 34(1), 1465-1480 (2020)
  • Jang HJ, Lim S, Kim JM, Yoon S, Lee CY, Hwang HJ, Shin JW, Shin KJ, Kim HY, Park KI, Nam D, Lee JY, Yea K, Hirabayashi Y, Lee YJ, Chae YC, Suh PG, Choi JH: Glucosylceramide synthase regulates adipo-osteogenic differentiation through synergistic activation of PPARγ with GlcCer. FASEB J. 34(1),1270-1287 (2020)
  • Tamura K, Sugita Y: Free Energy Analysis of a Conformational Change of Heme ABC Transporter BhuUV-T. J. Phys. Chem. Lett. 11, 2824-2829 (2020)
  • Tan C, Jung J, Kobayashi C, Sugita Y: A singularity-free torsion angle potential for coarse-grained molecular dynamics simulations. J. Chem. Phys. 153, 044110 (2020)
  • Oshima H, Re S, Sugita Y: Prediction of Protein-Ligand Binding Pose and Affinity Using the gREST+FEP Method. J. Chem. Inf. Model. 60, 5382-5394 (2020)
  • Matsunaga Y, Sugita Y: Use of single-molecule time-series data for refining conformational dynamics in molecular simulations. Curr. Opin. Struct. Biol. 61, 153-159 (2020)
  • Yoshizawa, R, Umeki, N, Yamamoto A, Murata M, Sako Y: Biphasic spatiotemporal regulation of GRB2 dynamics by p52SHC for transient RAS activation. Biophys. Physicobiol. 18, 1-12 (2020)